: Category 716

Category 716
Genotype results, process and QC

Description

Genotype results, process and QC

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22 Data-Fields

Field ID	Description	Category
22025	Affymetrix quality control metric "Cluster.CR"	Genotyping process and sample QC
22026	Affymetrix quality control metric "dQC"	Genotyping process and sample QC
22024	DNA concentration	Genotyping process and sample QC
22006	Genetic ethnic grouping	Genotyping process and sample QC
22021	Genetic kinship to other participants	Genotyping process and sample QC
22009	Genetic principal components	Genotyping process and sample QC
22001	Genetic sex	Genotyping process and sample QC
22000	Genotype measurement batch	Genotyping process and sample QC
22007	Genotype measurement plate	Genotyping process and sample QC
22008	Genotype measurement well	Genotyping process and sample QC
22003	Heterozygosity	Genotyping process and sample QC
22004	Heterozygosity, PCA corrected	Genotyping process and sample QC
22005	Missingness	Genotyping process and sample QC
22027	Outliers for heterozygosity or missing rate	Genotyping process and sample QC
22019	Sex chromosome aneuploidy	Genotyping process and sample QC
22022	Sex inference X probe-intensity	Genotyping process and sample QC
22023	Sex inference Y probe-intensity	Genotyping process and sample QC
22029	Use in phasing Chromosome X	Genotyping process and sample QC
22030	Use in phasing Chromosome XY	Genotyping process and sample QC
22028	Use in phasing Chromosomes 1-22	Genotyping process and sample QC
22020	Used in genetic principal components	Genotyping process and sample QC
22182	HLA imputation values	HLA	†

1 fields marked † are compound.

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