Listed below are the MD5 checksums for bulk datafiles related to the UKB genotype data. Authorised researchers may use the ukbgene utility to fetch these files directly from the UKB repository. Note when using md5sum to verify downloads that the ordering of the files and amount of whitespace may vary - hence it is recommended that the checksum data is sorted before doing any automated comparision. === SNP indexes === e6c4e139bd3fd10fb232f492b60ed1f1 ukb_snp_chr1_v2.bim 4be034e5bc738312274a35edf4c26baf ukb_snp_chr2_v2.bim a6ca9b059d5dccd629db4a18cf660beb ukb_snp_chr3_v2.bim c6a7ccc0c650380099a1320ef9490528 ukb_snp_chr4_v2.bim 0e161aad1463edce7c6194acc9484fca ukb_snp_chr5_v2.bim cb6c9a1b51dffd13bd12bb34671b7259 ukb_snp_chr6_v2.bim 5954f2c209caf4346df319298ea6039c ukb_snp_chr7_v2.bim 28f13b2072c9fc788881988f40530c69 ukb_snp_chr8_v2.bim dd126cc84f44262ce5f8de063f9865ad ukb_snp_chr9_v2.bim 47cb4af5fed7cd263333e06424f7883b ukb_snp_chr10_v2.bim 62003775187c4b9e7e3080c966631f3e ukb_snp_chr11_v2.bim e4b139ff8f138c15009892dcae33cf6e ukb_snp_chr12_v2.bim c6a4570c3706d36e48699732b7c6d26c ukb_snp_chr13_v2.bim eed3974765cc1478cebc7e516bd0d1ee ukb_snp_chr14_v2.bim badaa0b18a92893bdbef8cc7b78a4cd4 ukb_snp_chr15_v2.bim 9557dba71c779f476389b257ea73e570 ukb_snp_chr16_v2.bim c0be57fdca04705c96d0d6c5cd8b3af4 ukb_snp_chr17_v2.bim f3d61824404c19e8f91800cd0e923527 ukb_snp_chr18_v2.bim 322a693d0372420ecea63f8d421f579b ukb_snp_chr19_v2.bim 4b18d70ae56f801c081aaf98666ba68f ukb_snp_chr20_v2.bim edfbf5dde60356e155dd35a92044c870 ukb_snp_chr21_v2.bim 372f92368746545a5d42332dbc9f3193 ukb_snp_chr22_v2.bim ae49255f2997066215c53c4ffc97e527 ukb_snp_chrX_v2.bim f112cd575dd649adfcd71c5204b57c70 ukb_snp_chrY_v2.bim a09ef72de987b9d03e7a1cc5aedc8c0a ukb_snp_chrXY_v2.bim 4a94f835d9eeaf9bcf329070b667eedf ukb_snp_chrMT_v2.bim === Calls BED files === b46d4fefc8e5ea69de19f8e47de42b5d ukb_cal_chr1_v2.bed fd06007026fbc8f55d895d9beb745f7a ukb_cal_chr2_v2.bed 07deb29f777e29b28a2a72fbeeec1866 ukb_cal_chr3_v2.bed 634fc7b4d05cd71b01254a7533274840 ukb_cal_chr4_v2.bed 84f2c5e3c14a1e988d10778603de9c2d ukb_cal_chr5_v2.bed 88588c2ca17a6799194cced2d1dac52e ukb_cal_chr6_v2.bed f20b97dc17c442458b04554506312898 ukb_cal_chr7_v2.bed e35d792308fda7df31d4548c5355f83b ukb_cal_chr8_v2.bed a88f32d6766e4d69cc900d04f46a9c1e ukb_cal_chr9_v2.bed 34c5ee67f22995b2c5cdadb3ac20b85e ukb_cal_chr10_v2.bed 8c37a77ac9556f7093a5be62f25e5fc5 ukb_cal_chr11_v2.bed 3f3d701d5e7e4ebac4caea3be2078b88 ukb_cal_chr12_v2.bed 536b271f211d813e2ed2141ac476fbad ukb_cal_chr13_v2.bed 23daa4b464c0a13ab49a614cc5eae8cb ukb_cal_chr14_v2.bed fd3350bdff1a742d2b393c28976be242 ukb_cal_chr15_v2.bed 62bd46c46fcb5d2013019418195d28cf ukb_cal_chr16_v2.bed 2332bd376231ee2ebd89712254c10ab5 ukb_cal_chr17_v2.bed 721afa81ecd5ada0508f59c64c98b30c ukb_cal_chr18_v2.bed 9b75955d1fd917ba7e0a5f920a964ebb ukb_cal_chr19_v2.bed 9e5ac6c72ccb9e45ee3c000e4a66bc65 ukb_cal_chr20_v2.bed db8b15422664f43234128e74e18a059c ukb_cal_chr21_v2.bed 48051b94922e1d94d6f797aa718c4d33 ukb_cal_chr22_v2.bed 76afafae75c2b7bffeb84949a9b2de95 ukb_cal_chrX_v2.bed 70266dfb8124b9d4f7cec295715f0fa1 ukb_cal_chrY_v2.bed 94232d801c2ae5709598917c7c42dc6a ukb_cal_chrXY_v2.bed 912441143decb074dcfc2c1dacc0dd61 ukb_cal_chrMT_v2.bed === Confidences === 25bed666b69d3dad1260adf99230937c ukb_con_chr1_v2.txt f3c5bc9fb473ea47600fced4a1825327 ukb_con_chr2_v2.txt 9fd48f99be4596cb89743bd7ad2cebca ukb_con_chr3_v2.txt 66c04c9500b243b3f6d35759677c6627 ukb_con_chr4_v2.txt 6f3c969dfc14560273d156961e8275ea ukb_con_chr5_v2.txt a583742d3368de7b8769505c2e31ad51 ukb_con_chr6_v2.txt 43ec779856b0b098a6f7b9e53c17d682 ukb_con_chr7_v2.txt 96cc79a22d01d9b7cb8a82b67a0486a0 ukb_con_chr8_v2.txt 3a3213e66251bea51bf820b4b7cd39c3 ukb_con_chr9_v2.txt b8d2544f71e80496ef1a6f1e82a0c267 ukb_con_chr10_v2.txt 7e7554e3e9b0fd444fed34c0349599da ukb_con_chr11_v2.txt d10a223141baf2a6fd9579b394bdf8aa ukb_con_chr12_v2.txt b489035a3811855b3862887bcfbcebfb ukb_con_chr13_v2.txt d738de018da351ada15ba30a18915577 ukb_con_chr14_v2.txt c7d2f3bfb85dbb41e34c44b7112640de ukb_con_chr15_v2.txt 1115e718a917d54faecf3f7cfe7437b7 ukb_con_chr16_v2.txt 61d7d06fbf7c790af3618776bb8e1446 ukb_con_chr17_v2.txt a95981dc3431a76cb50b5c6542c58647 ukb_con_chr18_v2.txt 3a2ce28f359eac3c5311b6d12316004c ukb_con_chr19_v2.txt fe4b2499255be7c1ca7ad43f465fb512 ukb_con_chr20_v2.txt f2c48026921f7f722a7d006701bab3fa ukb_con_chr21_v2.txt 8588fc4da2ee86495104ea6e99466294 ukb_con_chr22_v2.txt e985a8ad895f33ac36c25c1cb6819757 ukb_con_chrX_v2.txt b8418b2f4034f2640ee3767d9e55b128 ukb_con_chrY_v2.txt f47ebd4c8f98091a8f84acd0f3863950 ukb_con_chrXY_v2.txt 58ad522fb36dde5d0c61aaa236bc9198 ukb_con_chrMT_v2.txt === Intensities === b8c246bb8f3ed42f1a271377d6a8999e ukb_int_chr1_v2.bin b3c5b219b3c5b7609f13042077ba688f ukb_int_chr2_v2.bin 6971b1fe1aaf9737b2cc16253d86aa7e ukb_int_chr3_v2.bin b1d4396af5ae0e6bb9f74f10090cba3e ukb_int_chr4_v2.bin 73055685fac1611bdd6716cf05d9ca00 ukb_int_chr5_v2.bin 32132eeb1f3b41c27e0cec05007cec79 ukb_int_chr6_v2.bin 5c77347e1080f3fcaf19aa5091dfaf1b ukb_int_chr7_v2.bin 86d33d6a1653301b7b34a1b4a5c2cfc1 ukb_int_chr8_v2.bin 381c34f655b05d5e03cef80e43d7a5a2 ukb_int_chr9_v2.bin 3ce727c6620fb67225e0324d71bc9809 ukb_int_chr10_v2.bin 34062e2af6b68bf1511dd39080496ef4 ukb_int_chr11_v2.bin 596f8847313773c224ccb02369c0d081 ukb_int_chr12_v2.bin ae1c204bfb1b589c82398d2e80761adf ukb_int_chr13_v2.bin ae2dca5605951c0dccf919b243e55900 ukb_int_chr14_v2.bin 03f7e25dd1198c7bdece1f21894d3f69 ukb_int_chr15_v2.bin ac00a1e899bca5097d30f1886eb64ba1 ukb_int_chr16_v2.bin 5676b24c43404b9cc8cbdec6c34ae5c9 ukb_int_chr17_v2.bin 42fe475ab3d22c9399c9d7dd0da57d3c ukb_int_chr18_v2.bin ba666280c0713abe06d8278d836d1c5d ukb_int_chr19_v2.bin 4afa66e4486df33fb0992560ab744611 ukb_int_chr20_v2.bin 015443e5f7398ccf8f70a517ecf74ad0 ukb_int_chr21_v2.bin 4ed757a59ff9c198f5a14435b58a0a2a ukb_int_chr22_v2.bin ed9323bebd9a58e7bcd0a38c15ac9a44 ukb_int_chrX_v2.bin 32afdf866f20fc1af873e8463296574c ukb_int_chrY_v2.bin b5d1151bdc957bab9ff4942f7599735f ukb_int_chrXY_v2.bin 8e15ea132d7a860152ccdfd5099063d7 ukb_int_chrMT_v2.bin === CNV B-allele frequencies === bb47533ca0e30344cec12ae42e8595c2 ukb_baf_chr1_v2.txt 0d95b142ab5929123356fba717ea29d2 ukb_baf_chr2_v2.txt e3ad3c9ecb69750c97ebfc7d6905361b ukb_baf_chr3_v2.txt 20f9e7cb0576f231b604e61432a9f0ad ukb_baf_chr4_v2.txt 57bc5f54130c1215da77e3cfe3ec60fd ukb_baf_chr5_v2.txt 07c64fd1d06076c66e4a97d6a0cddeb2 ukb_baf_chr6_v2.txt b2cf959ea45ed1a06a7a06bb801d237f ukb_baf_chr7_v2.txt 730da154444faf91ce97cbfcb28a7c9d ukb_baf_chr8_v2.txt 22f6a9606d14f0247f2d3094e6c4796c ukb_baf_chr9_v2.txt e73e087c93ec7e3ca48f5d2b6f563eb5 ukb_baf_chr10_v2.txt 49ad914b8126b9d817e611a5cc230d17 ukb_baf_chr11_v2.txt 37950c954c7373da0d896b903b540415 ukb_baf_chr12_v2.txt 98b56b121e313431b01430cb9805539a ukb_baf_chr13_v2.txt 2f3b44525d587ef720a96699616f6ead ukb_baf_chr14_v2.txt 16408615e8ccb28f47e8fafab81a0382 ukb_baf_chr15_v2.txt d9d5af198dca561763020842fd2593f0 ukb_baf_chr16_v2.txt 4b64fb6b34aa9417ec41d37984a4f191 ukb_baf_chr17_v2.txt 075866e24886b72632bce17dea930aff ukb_baf_chr18_v2.txt 3125e19bcb181dea0d6a4d945e98a5e9 ukb_baf_chr19_v2.txt 62fa4790b12e3d87bcd3f89e694c27d0 ukb_baf_chr20_v2.txt df66eca228bad18ea1bcee2bd9c258f7 ukb_baf_chr21_v2.txt 74e6f0c238d0619251966fb0fb6ddd93 ukb_baf_chr22_v2.txt c4027bde44662a47ffae08f180171037 ukb_baf_chrX_v2.txt 8cad7b3ad4885f92bb3ded4ca1b3308f ukb_baf_chrY_v2.txt 32e1e8b616397c5d19dbdb734c3b257c ukb_baf_chrXY_v2.txt 4897143fece949eb89a1776195cc31d7 ukb_baf_chrMT_v2.txt === CNV log2ratios === ca54c24ff504f33c924cf3360a540ffc ukb_l2r_chr1_v2.txt 2ba9429a102dca3edc057079bcfa72f4 ukb_l2r_chr2_v2.txt e09c1e2f691f5eef30af3ea8aab62086 ukb_l2r_chr3_v2.txt 1478dcbcdad288b02f51330b7b2ca44b ukb_l2r_chr4_v2.txt af751462452c2c6c371122781362fc1e ukb_l2r_chr5_v2.txt 18729fcd718c3d61047417bb2e6560a4 ukb_l2r_chr6_v2.txt db809846cecad506609a6d41f5fd59d6 ukb_l2r_chr7_v2.txt 5d21d8a0ca563e43f45e3baf269d64d6 ukb_l2r_chr8_v2.txt 3f97155d5cefb09598d18ce5909de2dd ukb_l2r_chr9_v2.txt 74967d6d7251c079e9fde0470f3a8ebd ukb_l2r_chr10_v2.txt 657bc97af622f14cd73bcff42196f906 ukb_l2r_chr11_v2.txt f82bf7e6d98d6019392bbcb5bbe873db ukb_l2r_chr12_v2.txt 79ce2185a8d4779c2af872cc8aefc91c ukb_l2r_chr13_v2.txt bc5977d0db31b583a98e65280e10f08d ukb_l2r_chr14_v2.txt f9224c3ab7f5bd75f5542adfc4b0e9c9 ukb_l2r_chr15_v2.txt cb6b6f38b0db896497c20a85ab791cfa ukb_l2r_chr16_v2.txt 8eeb3f725b9c714af5b04f5f8c5d4eb6 ukb_l2r_chr17_v2.txt 6f118bead5a6ba3c4b63ce025069363c ukb_l2r_chr18_v2.txt b9beda4693a52c6e681587b811313aa4 ukb_l2r_chr19_v2.txt 24461e2ff46407b58236dae3c69ee424 ukb_l2r_chr20_v2.txt ca8fcbf8c154302d028d3233f131c71f ukb_l2r_chr21_v2.txt 5d6905d88df2cea4ade164ec5a27936a ukb_l2r_chr22_v2.txt cd1a807b46975660c467202c935a88ff ukb_l2r_chrX_v2.txt bb981e00f73ec29f1ec8283b0f52a5c8 ukb_l2r_chrY_v2.txt 6648e4ff223767d5debf054270eb3346 ukb_l2r_chrXY_v2.txt 0a07c6ae3d7794cf5b1313c2d60c153f ukb_l2r_chrMT_v2.txt === END