#!/bin/sh if [[ $1 != "cal" && $1 != "con" && $1 != "int" && $1 != "baf" && $1 != "l2r" && $1 != "imp" && $1 != "hap" ]] then echo "First param must be one of cal,con,int,baf,l2r,imp,hap" exit fi # # Loop through chromosomes # for CHR in {1..26} do ukbgene $1 -c$CHR -a.ukbkey done