| Title: | Developing and validating COVID-19 adverse outcome risk prediction models from a bi-national European cohort of 5594 patients |
| Journal: | Scientific Reports |
| Published: | 5 Feb 2021 |
| Pubmed: | https://pubmed.ncbi.nlm.nih.gov/33547335/ |
| DOI: | https://doi.org/10.1038/s41598-021-81844-x |
| URL: | https://www.nature.com/articles/s41598-021-81844-x.pdf |
Publication 9550
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Abstract
Patients with severe COVID-19 have overwhelmed healthcare systems worldwide. We hypothesized that machine learning (ML) models could be used to predict risks at different stages of management and thereby provide insights into drivers and prognostic markers of disease progression and death. From a cohort of approx. 2.6 million citizens in Denmark, SARS-CoV-2 PCR tests were performed on subjects suspected for COVID-19 disease; 3944 cases had at least one positive test and were subjected to further analysis. SARS-CoV-2 positive cases from the United Kingdom Biobank was used for external validation. The ML models predicted the risk of death (Receiver Operation Characteristics - Area Under the Curve, ROC-AUC) of 0.906 at diagnosis, 0.818, at hospital admission and 0.721 at Intensive Care Unit (ICU) admission. Similar metrics were achieved for predicted risks of hospital and ICU admission and use of mechanical ventilation. Common risk factors, included age, body mass index and hypertension, although the top risk features shifted towards markers of shock and organ dysfunction in ICU patients. The external validation indicated fair predictive performance for mortality prediction, but suboptimal performance for predicting ICU admission. ML may be used to identify drivers of progression to more severe disease and for prognostication patients in patients with COVID-19. We provide access to an online risk calculator based on these findings.</p>
35 Authors
- Espen Jimenez-Solem
- Tonny S. Petersen
- Casper Hansen
- Christian Hansen
- Christina Lioma
- Christian Igel
- Wouter Boomsma
- Oswin Krause
- Stephan Lorenzen
- Raghavendra Selvan
- Janne Petersen
- Martin Erik Nyeland
- Mikkel Zöllner Ankarfeldt
- Gert Mehl Virenfeldt
- Matilde Winther-Jensen
- Allan Linneberg
- Mostafa Mehdipour Ghazi
- Nicki Detlefsen
- Andreas David Lauritzen
- Abraham George Smith
- Marleen de Bruijne
- Bulat Ibragimov
- Jens Petersen
- Martin Lillholm
- Jon Middleton
- Stine Hasling Mogensen
- Hans-Christian Thorsen-Meyer
- Anders Perner
- Marie Helleberg
- Benjamin Skov Kaas-Hansen
- Mikkel Bonde
- Alexander Bonde
- Akshay Pai
- Mads Nielsen
- Martin Sillesen
1 Application
| Application ID | Title |
|---|---|
| 60861 | Towards personalised medicine in surgery - the role of genomics in regulating postoperative complications. |
Enabling scientific discoveries that improve human health