| Title: | Genome-wide association meta-analysis of 88,250 individuals highlights pleiotropic mechanisms of five ocular diseases in UK Biobank |
| Journal: | EBioMedicine |
| Published: | 15 Jul 2022 |
| Pubmed: | https://pubmed.ncbi.nlm.nih.gov/35841873/ |
| DOI: | https://doi.org/10.1016/j.ebiom.2022.104161 |
| URL: | http://www.thelancet.com/article/S2352396422003425/pdf |
Publication 14113
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Abstract
BACKGROUND: Ocular diseases may exhibit common clinical symptoms and epidemiological comorbidity. However, the extent of pleiotropic mechanisms across ocular diseases remains unclear. We aim to examine shared genetic etiology in age-related macular degeneration (AMD), diabetic retinopathy (DR), glaucoma, retinal detachment (RD), and myopia.</p>
METHODS: We analyzed genome-wide association analyses for the five ocular diseases in 43,877 cases and 44,373 controls of European ancestry from UK Biobank, estimated their genetic relationships (LDSC, GNOVA, and Genomic SEM), and identified pleiotropic loci (ASSET and METASOFT).</p>
FINDINGS: The genetic correlation of common SNPs revealed a meaningful genetic structure within these diseases, identifying genetic correlations between AMD, DR, and glaucoma. Cross-trait meta-analysis identified 23 pleiotropic loci associated with at least two ocular diseases and 14 loci unique to individual disorders (non-pleiotropic). We found that the genes associated with these shared genetic loci are involved in neuron differentiation (P = 8.80 × 10-6) and eye development systems (P = 3.86 × 10-5), and single cell RNA sequencing data reveals their heightened gene expression from multipotent progenitors to other differentiated retinal cells during retina developmental process.</p>
INTERPRETATION: These results highlighted the potential common genetic architectures among these ocular diseases and can deepen the understanding of the molecular mechanisms underlying the related diseases.</p>
FUNDING: The National Natural Science Foundation of China (61871294), Zhejiang Provincial Natural Science Foundation of China (LR19C060001), and the Scientific Research Foundation for Talents of Wenzhou Medical University (QTJ18023).</p>
11 Keywords
- Biological Specimen Banks
- Diabetic Retinopathy
- Genetic Predisposition to Disease
- Genome-Wide Association Study
- Glaucoma
- Humans
- Macular Degeneration
- Myopia
- Polymorphism, Single Nucleotide
- Retinal Detachment
- United Kingdom
12 Authors
- Zhengbo Xue
- Jian Yuan
- Fukun Chen
- Yinghao Yao
- Shilai Xing
- Xiangyi Yu
- Kai Li
- Chenxiao Wang
- Jinhua Bao
- Jia Qu
- Jianzhong Su
- Hao Chen
1 Application
| Application ID | Title |
|---|---|
| 45270 | An artificial intelligence algorithm based on deep learning and molecular diagnosis for identifying ocular diseases. |
Enabling scientific discoveries that improve human health